PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01002442001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family M-type_MADS
Protein Properties Length: 110aa    MW: 12618 Da    PI: 10.6963
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01002442001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.62.9e-273383151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       k+i n+  rqvtfskRr g++KKA+ELS+LCdae+a+i+fs  gkl+eyss
  GSVIVT01002442001 33 KKIGNTAARQVTFSKRRRGLFKKAQELSTLCDAEIALIVFSAAGKLFEYSS 83
                       6899*********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.57E-262587IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-352584IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.952585IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-262747IPR002100Transcription factor, MADS-box
CDDcd002652.52E-3428105No hitNo description
PfamPF003196.5E-253481IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-264762IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-266283IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MCFSLFMYGL VLIFSVKGWV ENFPMAQQKI QIKKIGNTAA RQVTFSKRRR GLFKKAQELS  60
TLCDAEIALI VFSAAGKLFE YSSSRLVFSS LPFLLFIHRY MNLSAFCRQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-182586162Myocyte-specific enhancer factor 2B
1tqe_Q5e-182586162Myocyte-specific enhancer factor 2B
1tqe_R5e-182586162Myocyte-specific enhancer factor 2B
1tqe_S5e-182586162Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.147077e-97stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4582321e-168AM458232.1 Vitis vinifera contig VV79X006609.2, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010648099.15e-35PREDICTED: MADS-box protein AGL24-like isoform X4
SwissprotO827942e-28AGL24_ARATH; MADS-box protein AGL24
SwissprotQ9FUY64e-28JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLD7UBC13e-55D7UBC1_VITVI; Putative uncharacterized protein
STRINGVIT_15s0024g02000.t017e-55(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.11e-29AGAMOUS-like 24